icebert / pblatLinks
parallelized blat with multi-threads support
☆53Updated 7 months ago
Alternatives and similar repositories for pblat
Users that are interested in pblat are comparing it to the libraries listed below
Sorting:
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- PHAST☆74Updated last week
- A collection of command line tools for working with sequencing data☆51Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 8 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 4 months ago
- ☆49Updated 9 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- web documentation for Trinotate☆48Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago