parallelized blat with multi-threads support
☆56Jan 23, 2025Updated last year
Alternatives and similar repositories for pblat
Users that are interested in pblat are comparing it to the libraries listed below
Sorting:
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 4 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Linear-time de novo Long Read Assembler☆41Updated this week
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 10 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Synteny Mapping and Analysis Program☆30Mar 11, 2026Updated last week
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 5 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- ☆14Mar 22, 2018Updated 8 years ago
- ☆45Dec 11, 2016Updated 9 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- Contig Ploidy and Allele Dosage Estimation☆10Oct 30, 2015Updated 10 years ago
- ☆39Feb 22, 2023Updated 3 years ago