icebert / pblatLinks
parallelized blat with multi-threads support
☆53Updated 5 months ago
Alternatives and similar repositories for pblat
Users that are interested in pblat are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆101Updated 5 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 6 months ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- Tools for the analysis of structural variation in genomes☆80Updated last year
- Same species annotation lift over pipeline.☆98Updated last year
- SV caller for nanopore data☆91Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- ☆49Updated 8 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- PHAST☆73Updated 3 weeks ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated last month
- My bioinfo toolbox☆50Updated 5 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago