HKU-BAL / CPGLinks
Building a Chinese pan-genome of 486 individuals
☆11Updated 2 years ago
Alternatives and similar repositories for CPG
Users that are interested in CPG are comparing it to the libraries listed below
Sorting:
- ☆30Updated 5 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Updated 3 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- This is the Haplotypo repository☆20Updated last year
- My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/☆8Updated 2 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Updated 13 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆16Updated 2 years ago
- Characterization of Structural Variation in Chinese samples☆18Updated 3 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- ☆48Updated last year
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Updated 6 years ago
- ☆34Updated last year
- ☆15Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Detection and genotyping of structural variants☆18Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- new repo☆28Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago