HKU-BAL / CPGLinks
Building a Chinese pan-genome of 486 individuals
☆11Updated 2 years ago
Alternatives and similar repositories for CPG
Users that are interested in CPG are comparing it to the libraries listed below
Sorting:
- ☆31Updated 5 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- ☆16Updated 4 years ago
- This is the Haplotypo repository☆20Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Characterization of Structural Variation in Chinese samples☆18Updated 3 years ago
- Detection and genotyping of structural variants☆18Updated 5 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- ☆48Updated last year
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- ☆36Updated last year
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Updated 6 years ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- ☆31Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago