an R/shiny application for creation of Circos plot interactively
☆157Sep 25, 2022Updated 3 years ago
Alternatives and similar repositories for shinyCircos
Users that are interested in shinyCircos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45May 15, 2025Updated 10 months ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated last year
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Nov 4, 2021Updated 4 years ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Oct 10, 2022Updated 3 years ago
- an R/Shiny application for interactive creation of Circos plot☆50Apr 5, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- QTL mapping with binmap data☆18May 18, 2019Updated 6 years ago
- Circular visualization in R☆1,011Nov 11, 2023Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- Integrative analysis of structural variations.☆40Dec 20, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated last month
- R interface to the JBrowse 2 Linear Genome View.☆39Mar 12, 2024Updated 2 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆365Jun 6, 2025Updated 10 months ago
- ☆194Sep 22, 2020Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆897Apr 2, 2026Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Web application for enormous biological heatmaps☆68Jul 18, 2020Updated 5 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- source code for EVM☆123Nov 29, 2024Updated last year
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆111Jan 30, 2026Updated 2 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 3 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆162Nov 4, 2025Updated 5 months ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated 2 months ago
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆585Jan 13, 2026Updated 3 months ago
- RepeatIdentifier☆71Mar 19, 2025Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Nov 24, 2025Updated 4 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- ☆31Feb 6, 2026Updated 2 months ago
- Visualizing publication-quality multiple sequence alignment using ggplot2☆217Nov 1, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆76Apr 23, 2020Updated 5 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Htmlwidgets binding R commands to the BioCircos.js library☆39May 3, 2019Updated 6 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 5 months ago