TheJacksonLaboratory / pyBedGraph

Related projects ⓘ

Alternatives and complementary repositories for pyBedGraph

• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 3 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆27Updated last month
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 6 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 10 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 10 months ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated last month
• gymreklab / chips
  Simulation tool for ChIP- and other -seq experiments
  ☆12Updated last year
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 2 months ago
• favorov / stereogene
  ☆12Updated last week
• hoffmangroup / umap
  ☆24Updated 7 months ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆31Updated 7 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆41Updated last year
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆14Updated last month
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last year
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆39Updated 2 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 5 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆35Updated 11 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆22Updated 2 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆28Updated last week
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 5 years ago
• keleslab / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆11Updated 3 years ago
• InscriptaLabs / BioCantor
  ☆21Updated last year