TheJacksonLaboratory / pyBedGraphLinks
A Python package for fast operations on 1-dimensional genomic signal tracks
☆23Updated 5 years ago
Alternatives and similar repositories for pyBedGraph
Users that are interested in pyBedGraph are comparing it to the libraries listed below
Sorting:
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- BED QC tool (in the making)☆17Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Processing and plotting tools for genomics data☆21Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- ☆16Updated last year
- ☆23Updated last week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Bedfile perturbation tool☆17Updated 3 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago