TheJacksonLaboratory / pyBedGraphLinks
A Python package for fast operations on 1-dimensional genomic signal tracks
☆23Updated 5 years ago
Alternatives and similar repositories for pyBedGraph
Users that are interested in pyBedGraph are comparing it to the libraries listed below
Sorting:
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- ☆16Updated 11 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 4 months ago
- a minimal, scriptable genome browser for python☆53Updated last year
- A python package for showing JBrowse views☆26Updated last year
- ☆22Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- Bedfile perturbation tool☆17Updated 3 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Processing and plotting tools for genomics data☆21Updated last week
- Two pass alignment for long reads☆22Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- BED QC tool (in the making)☆17Updated 3 years ago
- ☆18Updated 5 years ago
- ☆23Updated 3 weeks ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Updated 4 years ago