A Python package for fast operations on 1-dimensional genomic signal tracks
☆23Apr 3, 2020Updated 5 years ago
Alternatives and similar repositories for pyBedGraph
Users that are interested in pyBedGraph are comparing it to the libraries listed below
Sorting:
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- ☆12Apr 9, 2018Updated 7 years ago
- ☆10Mar 4, 2025Updated 11 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 6 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- A Shiny App for visualizing genomic data☆19Apr 24, 2022Updated 3 years ago
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated 3 weeks ago
- A read extraction and realignment tool for next generation sequencing data☆105Oct 29, 2022Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- ☆18May 19, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Aug 13, 2024Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆152Feb 12, 2026Updated 2 weeks ago
- A python extension for quick access to bigWig and bigBed files☆239Jan 14, 2026Updated last month