TheJacksonLaboratory / pyBedGraphLinks
A Python package for fast operations on 1-dimensional genomic signal tracks
☆24Updated 5 years ago
Alternatives and similar repositories for pyBedGraph
Users that are interested in pyBedGraph are comparing it to the libraries listed below
Sorting:
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- ☆22Updated last year
- Long RNA-seq analysis workflow☆18Updated 6 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆11Updated this week
- ☆26Updated 2 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 7 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆20Updated last year
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- ☆16Updated 5 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated 3 months ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆12Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 weeks ago