TheJacksonLaboratory / pyBedGraph
A Python package for fast operations on 1-dimensional genomic signal tracks
☆24Updated 5 years ago
Alternatives and similar repositories for pyBedGraph:
Users that are interested in pyBedGraph are comparing it to the libraries listed below
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- End-guided RNA assembler☆15Updated 2 weeks ago
- Two pass alignment for long reads☆22Updated 4 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Bedfile perturbation tool☆17Updated last year
- Interactive eQTL visualizations☆13Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆14Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- Calculate and plot distributions of genomic ranges☆26Updated last month
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Blazing fast toolkit to work with .hic and .cool files☆30Updated last week
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Processing and plotting tools for genomics data☆20Updated last month
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year