SouthGreenPlatform / PyRiceLinks
PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.
☆12Updated 7 months ago
Alternatives and similar repositories for PyRice
Users that are interested in PyRice are comparing it to the libraries listed below
Sorting:
- Toy files and training material to introduce Linux to molecular biologists☆22Updated 2 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆22Updated 2 years ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- End-guided RNA assembler☆15Updated 3 weeks ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Repository for pipeline code☆26Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- ☆25Updated last month
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 10 months ago
- ☆22Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 months ago
- Evolutionary Transcriptomics with R☆45Updated this week
- RNAseq analysis with Hisat2, stringtie, and ballgown☆16Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- ☆19Updated 2 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- tspex: tissue-specificity calculator☆32Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 8 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 2 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago