SouthGreenPlatform / PyRiceLinks
PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.
☆12Updated 6 months ago
Alternatives and similar repositories for PyRice
Users that are interested in PyRice are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Repository for pipeline code☆25Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- End-guided RNA assembler☆15Updated 2 months ago
- Toy files and training material to introduce Linux to molecular biologists☆22Updated last year
- ☆19Updated 2 years ago
- ☆20Updated 8 months ago
- ☆16Updated last year
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated 2 years ago
- ☆16Updated last week
- ☆25Updated last week
- FunctionaL Omics Processing platform☆13Updated 11 months ago
- ☆17Updated 11 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆21Updated last year
- ☆23Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated last month
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆20Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 2 weeks ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- R package for DNA methylation analysis☆18Updated 10 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Improving gene isoform quantification with miniQuant☆19Updated last month
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆14Updated 3 years ago