Uauy-Lab / WheatHomoeologExpressionLinks
☆15Updated 5 years ago
Alternatives and similar repositories for WheatHomoeologExpression
Users that are interested in WheatHomoeologExpression are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆22Updated 6 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- ☆14Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- iTAK☆44Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- ☆21Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 8 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Structural variant merging tool☆55Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- ☆21Updated 6 years ago
- QTL mapping with binmap data☆18Updated 6 years ago
- ☆15Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago