Alternatives and similar repositories for maize_genomic_ecosystem

Users that are interested in maize_genomic_ecosystem are comparing it to the libraries listed below

• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 5 months ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• hemstrow / snpR
  ☆31Updated this week
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆16Updated 7 years ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• baduelp / public
  ☆16Updated 11 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• ZhangRenL / geneHapR
  ☆15Updated last year
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 4 months ago
• GenisGE / evalAdmix
  ☆15Updated last year
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 4 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆19Updated 3 years ago
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated last month
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆17Updated 3 years ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated 2 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• xuzhougeng / binmapr
  R package for binmap
  ☆13Updated 2 years ago