mcstitzer / maize_genomic_ecosystem

Related projects ⓘ

Alternatives and complementary repositories for maize_genomic_ecosystem

• jdaron / CLARI-TE
  ☆10Updated 9 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆15Updated 4 years ago
• hemstrow / snpR
  ☆28Updated this week
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆36Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆29Updated 4 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• baduelp / public
  ☆16Updated last month
• GonzalezLab / T-lex3
  ☆14Updated 4 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆19Updated this week
• GaoLei-bio / SV
  ☆14Updated 2 years ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆35Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 3 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆26Updated 3 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 9 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆39Updated 5 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆13Updated 5 months ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated 8 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated last month
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆14Updated 4 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆29Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago