mcstitzer / maize_genomic_ecosystem
☆11Updated 2 years ago
Alternatives and similar repositories for maize_genomic_ecosystem:
Users that are interested in maize_genomic_ecosystem are comparing it to the libraries listed below
- A repo contains historical and updated MTEC libraries.☆17Updated 4 years ago
- ☆10Updated 10 years ago
- ☆29Updated last week
- ☆14Updated 4 years ago
- ☆16Updated 3 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Transposable element polymorphism identification☆32Updated 4 years ago
- ☆14Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 7 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated last month
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 9 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- A box of genomics tools☆21Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 2 years ago
- ☆16Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆21Updated 6 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆15Updated last year