Alternatives and similar repositories for PanglaoDB:

Users that are interested in PanglaoDB are comparing it to the libraries listed below

• JiaLiVUMC / scMRMA
  ☆16Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 weeks ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated 3 weeks ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 3 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆76Updated last year
• xiebb123456 / AutomaticCellTypeIdentification
  ☆21Updated 3 years ago
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• KlugerLab / DAseq
  ☆40Updated 4 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆54Updated 3 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆54Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated 10 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 4 months ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆30Updated last week
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated 3 weeks ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆29Updated last year
• satijalab / azimuth-references
  ☆22Updated 6 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆71Updated this week
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆74Updated 4 months ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆46Updated 2 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆41Updated 2 years ago
• vitkl / orthologsBioMART
  One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
  ☆22Updated 3 years ago