Alternatives and similar repositories for PanglaoDB

Users that are interested in PanglaoDB are comparing it to the libraries listed below

• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• cellatlas / human
  ☆44Updated last year
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last week
• satijalab / azimuth-references
  ☆25Updated 5 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• lcmmichielsen / scHPL
  ☆37Updated 8 months ago
• QiuyuLian / CITE-sort
  ☆17Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated last week
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆92Updated last year
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆90Updated 5 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆86Updated this week
• SingleR-inc / celldex
  Collection of cell type reference datasets.
  ☆61Updated last year
• HelenaLC / muscat-comparison
  ☆12Updated last year
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 6 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• mathewchamberlain / SignacX
  Signac
  ☆25Updated 2 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆28Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆43Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago