maximilianh / cellBrowserLinks
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
☆113Updated 2 years ago
Alternatives and similar repositories for cellBrowser
Users that are interested in cellBrowser are comparing it to the libraries listed below
Sorting:
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Java tools for analyzing Drop-seq data☆130Updated last week
- Genetic multiplexing of barcoded single cell RNA-seq☆129Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- ☆117Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆97Updated 4 years ago
- Tools for single-cell data processing☆126Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- ☆69Updated 7 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- ☆70Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆148Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago