tzeitim / genome-blenderLinks
Scripts to create cartoons of 3D genomes
☆12Updated last year
Alternatives and similar repositories for genome-blender
Users that are interested in genome-blender are comparing it to the libraries listed below
Sorting:
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Updated 2 years ago
- Galaxy Docker Image for the HiCExplorer☆10Updated 6 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Updated 3 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- SIP: Significant Interaction Peak caller☆15Updated 9 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python☆18Updated 9 years ago
- Interactive TooManyCells Trees☆13Updated last year
- ☆17Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Updated 10 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated last week
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Updated 2 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated 2 years ago
- Course website for Genomic Data Visualization 2022☆16Updated 3 years ago
- Tools for handling HiC and 5C data☆24Updated last year
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- ☆30Updated last year
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 6 months ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11Updated 4 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 3 years ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Updated 4 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- ☆52Updated 2 years ago