☆26Oct 23, 2024Updated last year
Alternatives and similar repositories for scATACpipe
Users that are interested in scATACpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"☆21Jul 16, 2021Updated 4 years ago
- ☆20Jun 26, 2025Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Guides and reference material for the Workflow Description Language.☆16Feb 12, 2026Updated 4 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Jun 5, 2026Updated last month
- ☆19Mar 8, 2023Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Apr 1, 2026Updated 3 months ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- ☆22Aug 20, 2024Updated last year
- Multi-omics factor analysis v2☆66May 21, 2026Updated last month
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆162Jun 23, 2026Updated last week
- ☆13May 13, 2024Updated 2 years ago
- ☆30Jul 25, 2024Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- ☆13Dec 20, 2025Updated 6 months ago
- ☆21Sep 8, 2023Updated 2 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Repository for the HPC & Data Science Summer Institute 2024☆12Mar 7, 2025Updated last year
- ☆12Jan 27, 2023Updated 3 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- ☆27Oct 25, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Website for the UBC Community Wiki☆12Mar 7, 2026Updated 3 months ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆24Jan 31, 2026Updated 5 months ago
- ☆23Jun 5, 2021Updated 5 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆18Dec 11, 2025Updated 6 months ago
- ☆23Jul 15, 2025Updated 11 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Jun 11, 2025Updated last year