bpucker / RNA-Seq_analysisLinks
scripts for RNA-Seq analysis
☆28Updated 3 years ago
Alternatives and similar repositories for RNA-Seq_analysis
Users that are interested in RNA-Seq_analysis are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆18Updated last year
- A continually expanding collection of RNA-seq tools☆53Updated last month
- ☆15Updated 3 years ago
- Define regions in the genome☆33Updated 3 years ago
- ☆20Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- RNA editing quantification in deep transcriptome data☆16Updated 4 months ago
- ☆23Updated 9 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- visual analysis of your VCF files☆38Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- ☆23Updated 9 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last week
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆18Updated last month
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 9 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆24Updated 5 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago