analysis of single cell RNA sequencing data and cell type annotation
☆19Jan 2, 2020Updated 6 years ago
Alternatives and similar repositories for alona
Users that are interested in alona are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- metadata and data from the database☆43Jan 29, 2020Updated 6 years ago
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆55Apr 28, 2023Updated 3 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated last year
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 2 months ago
- ☆12Sep 20, 2019Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆29Jan 9, 2021Updated 5 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- ☆36Nov 29, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DistMap☆15Nov 23, 2021Updated 4 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Mar 20, 2023Updated 3 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- Estimate genetic correlation using predicted expression☆27Mar 8, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆32Feb 18, 2022Updated 4 years ago
- ☆73Apr 17, 2024Updated 2 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- ☆39Apr 9, 2021Updated 5 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- The blog of tidyomics☆13Jul 12, 2025Updated 11 months ago
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Paired-seq☆15Jul 17, 2024Updated last year
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 5 months ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 4 years ago
- Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)☆17May 29, 2020Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- ☆25Aug 5, 2025Updated 10 months ago
- A repo for implementation of Graph features autoencoder for expression values prediction and imputation☆18May 11, 2021Updated 5 years ago