oscar-franzen / alonaLinks
analysis of single cell RNA sequencing data and cell type annotation
☆19Updated 5 years ago
Alternatives and similar repositories for alona
Users that are interested in alona are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆63Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- ☆62Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆17Updated 6 years ago
- ☆25Updated last month
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- ☆48Updated 7 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆58Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆41Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- ☆47Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- Code repository for single cell RNA-seq☆36Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago