oscar-franzen / alona
analysis of single cell RNA sequencing data and cell type annotation
☆19Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for alona
- ☆58Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- Mouse cell atlas☆59Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆25Updated 5 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- ☆59Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆66Updated 7 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- ☆55Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆34Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Code repository for single cell RNA-seq☆32Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- scWGCNA☆55Updated 2 years ago
- ☆39Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆49Updated 6 years ago
- SCDC☆42Updated last year
- R package for Pathway RespOnsive GENe activity inference☆93Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- ☆53Updated 3 years ago