theislab / scAnalysisTutorialLinks
☆10Updated 9 years ago
Alternatives and similar repositories for scAnalysisTutorial
Users that are interested in scAnalysisTutorial are comparing it to the libraries listed below
Sorting:
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- ☆69Updated 7 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ☆34Updated 6 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 6 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Updated 3 years ago
- ☆37Updated 2 weeks ago
- R code for single-cell analysis of intestinal epithelial cells☆23Updated 8 years ago
- ☆21Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆28Updated 7 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆46Updated last month
- easy access to benchmark datasets☆50Updated 7 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- ☆43Updated 2 years ago
- ☆71Updated last year
- Doublet detection in single-cell RNA-seq data.☆97Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆59Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- ☆23Updated 6 years ago