Alternatives and similar repositories for scAnalysisTutorial:

Users that are interested in scAnalysisTutorial are comparing it to the libraries listed below

• theislab / scanpy-in-R
  A guide to using the Python scRNA-seq analysis package Scanpy from R
  ☆13Updated 4 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• pachterlab / NYMP_2018
  ☆28Updated 5 years ago
• 10XGenomics / single-cell-3prime-snp-clustering
  ☆22Updated 6 years ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 2 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• adamh-broad / single_cell_intestine
  R code for single-cell analysis of intestinal epithelial cells
  ☆21Updated 7 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 5 months ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated last year
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• YosefLab / TRAPeS
  TCR Reconstruction Algorithm for Paired-End Single cell
  ☆14Updated 5 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆31Updated 5 years ago
• wenweixiong / MARVEL
  ☆44Updated 5 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆25Updated 5 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆46Updated 6 months ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• YosefLab / ImpulseDE2
  ☆36Updated 2 years ago
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆15Updated last year
• yjzhang / split-seq-pipeline
  ☆20Updated 4 years ago
• lcmmichielsen / scHPL
  ☆34Updated 8 months ago
• AllenWLynch / lisa
  ☆16Updated 11 months ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago