Alternatives and similar repositories for scAnalysisTutorial

Users that are interested in scAnalysisTutorial are comparing it to the libraries listed below

• theislab / scanpy-in-R
  A guide to using the Python scRNA-seq analysis package Scanpy from R
  ☆15Updated 5 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆53Updated last month
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated 2 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 6 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆57Updated last year
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• SUwonglab / scABC
  ☆21Updated 6 years ago
• lcmmichielsen / scHPL
  ☆37Updated 10 months ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆36Updated 5 years ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 9 years ago
• YosefLab / scone
  ☆55Updated 11 months ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆31Updated 2 years ago
• epigen / crop-seq
  Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
  ☆32Updated 7 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆58Updated 4 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆31Updated last year
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated last month
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆87Updated 8 months ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• ManchesterBioinference / Scasat
  Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
  ☆35Updated 6 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 5 years ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆97Updated 11 months ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆74Updated 2 years ago
• theislab / AutoGeneS
  ☆61Updated 4 years ago