☆10Dec 14, 2016Updated 9 years ago
Alternatives and similar repositories for scAnalysisTutorial
Users that are interested in scAnalysisTutorial are comparing it to the libraries listed below
Sorting:
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated 11 months ago
- Dorothea package in Python☆11Apr 5, 2022Updated 3 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 5 years ago
- Generate conda environment.yml from PEP 621 and/or flit config.☆11Sep 2, 2021Updated 4 years ago
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆14Feb 26, 2021Updated 5 years ago
- Use cases for anndata.☆14Jun 11, 2025Updated 8 months ago
- ☆42Sep 14, 2022Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Feb 16, 2026Updated last week
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- R code for single-cell analysis of intestinal epithelial cells☆23Nov 18, 2017Updated 8 years ago
- Code and documentation for the curation of cellxgene datasets☆53Feb 20, 2026Updated last week
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- ☆22Jan 6, 2026Updated last month
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 2 months ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆29Oct 16, 2021Updated 4 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Feb 8, 2018Updated 8 years ago
- A performant scientific image visualization system.☆36Feb 20, 2026Updated last week
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆83Updated this week
- ☆11Oct 10, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- ☆12Nov 7, 2025Updated 3 months ago
- ☆29Feb 1, 2023Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Dec 5, 2024Updated last year
- Hierarchical graph clustering☆38Jun 22, 2018Updated 7 years ago
- Store collections of experimental data based on TileDB☆12Feb 16, 2026Updated last week
- ☆12Aug 30, 2025Updated 5 months ago
- A Python Package for Stochastic Block Model Inference☆39Nov 25, 2019Updated 6 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- ☆11Oct 31, 2023Updated 2 years ago