Brings SummarizedExperiment to the tidyverse
☆30Mar 17, 2026Updated last week
Alternatives and similar repositories for tidySummarizedExperiment
Users that are interested in tidySummarizedExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 4 months ago
- The blog of tidyomics☆14Jul 12, 2025Updated 8 months ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆178Mar 18, 2026Updated last week
- ☆10Oct 6, 2020Updated 5 years ago
- Seurat meets tidyverse. The best of both worlds.☆162Mar 3, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- R package for normalisation of spatial transcriptomics data☆17Jan 21, 2026Updated 2 months ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 4 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 6 months ago
- Draw heatmap simply using a tidy data frame☆359Feb 7, 2026Updated last month
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last week
- Coefficient of Variation (CV) and Coefficient of Quartile Variation (CQV) with Confidence Intervals (CI)☆10Sep 1, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 5 months ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- ☆18Oct 17, 2023Updated 2 years ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Jan 28, 2026Updated last month
- Demonstration of the use of an R package to organize a data analysis project☆22Mar 30, 2020Updated 5 years ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 2 years ago
- Client for the Bioconductor AnnotationHub web resource☆19Oct 30, 2025Updated 4 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- Tools for Unmixing Spectral Flow Cytometry Data☆21Mar 13, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Associate pathways + gene ontologies with significant genes.☆10Jun 5, 2023Updated 2 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- Course website for Genomic Data Visualization 2024☆26Mar 15, 2024Updated 2 years ago
- An R interface to write OpenCL functions☆11Mar 15, 2022Updated 4 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- A project demonstrating the integration of Docker, DuckDB, R, and {targets} for robust and reproducible data pipelines.☆20Dec 29, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 5 months ago
- Core flow cytometry infrastructure☆56Jan 1, 2026Updated 2 months ago
- Tidy Verbs for Fast Data Manipulation☆108Dec 24, 2025Updated 3 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆16Apr 28, 2024Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Mar 18, 2026Updated last week
- ☆20Jun 26, 2025Updated 8 months ago