pachterlab / lair
home of the bear's lair
☆10Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for lair
- Examples of kallisto + sleuth☆11Updated 7 years ago
- ☆11Updated 6 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- Interactive benchmarking of ranking and assignment methods☆14Updated 3 weeks ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Gene network analysis☆19Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 6 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆23Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated this week
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Take command of your set enrichment analyses.☆20Updated this week
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Reproducible GSEA Benchmarking☆13Updated 3 weeks ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 6 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression