TRON-Bioinformatics / neofoxLinks
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
☆33Updated 8 months ago
Alternatives and similar repositories for neofox
Users that are interested in neofox are comparing it to the libraries listed below
Sorting:
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago
- ☆20Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Multi-Omics Peptide Generator☆28Updated last week
- ☆12Updated 7 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Updated last year
- Kdrew's scripts for handling protein complex map data☆14Updated 5 months ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- PRedictor of IMmunogenic Epitopes☆24Updated last month
- Summary statistics for repertoires☆17Updated 2 years ago
- R package for nucleotide conversion sequencing data analysis☆15Updated 9 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- DRUGZ software☆24Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Network Visualization using both GUI and Programming☆29Updated 5 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- ☆38Updated last year
- BPNet manuscript code.☆12Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago