ronaldhause / mosaicLinks
MicrOSAtellite Instability Classifier
☆15Updated 7 years ago
Alternatives and similar repositories for mosaic
Users that are interested in mosaic are comparing it to the libraries listed below
Sorting:
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ☆17Updated 2 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- ☆25Updated last year
- Scripts used for the ACT paper☆12Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- ☆12Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆41Updated 7 years ago
- ☆23Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Updated 3 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 11 months ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago