ronaldhause / mosaic
MicrOSAtellite Instability Classifier
☆15Updated 7 years ago
Alternatives and similar repositories for mosaic:
Users that are interested in mosaic are comparing it to the libraries listed below
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆13Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- ☆24Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- ☆10Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated 3 weeks ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 5 years ago
- ☆11Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago