wt12318 / NeoEnrichmentView external linksLinks
R package to do enrichment analysis for neoantigens
☆13Feb 21, 2022Updated 3 years ago
Alternatives and similar repositories for NeoEnrichment
Users that are interested in NeoEnrichment are comparing it to the libraries listed below
Sorting:
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 2 weeks ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Jan 28, 2022Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 2 years ago
- ☆23May 31, 2022Updated 3 years ago
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 weeks ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 5 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- PRedictor of IMmunogenic Epitopes☆25Sep 24, 2025Updated 4 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Updated this week
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- ☆11Apr 25, 2024Updated last year
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- ☆12May 24, 2022Updated 3 years ago
- ☆18May 8, 2023Updated 2 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated last month
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆14Feb 21, 2020Updated 5 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆13Nov 8, 2024Updated last year
- ☆13Oct 7, 2019Updated 6 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Jan 10, 2026Updated last month
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆15Oct 5, 2022Updated 3 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Feb 24, 2017Updated 8 years ago
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆28Dec 26, 2025Updated last month