ShixiangWang / Variants2NeoantigenLinks
A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
☆29Updated 5 years ago
Alternatives and similar repositories for Variants2Neoantigen
Users that are interested in Variants2Neoantigen are comparing it to the libraries listed below
Sorting:
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 6 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 8 months ago
- ☆16Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 2 weeks ago
- ☆40Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 9 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆28Updated last year
- ☆44Updated 6 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month