Alternatives and similar repositories for mhc-hammer

Users that are interested in mhc-hammer are comparing it to the libraries listed below

• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 5 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆42Updated 3 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 11 months ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆64Updated last week
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• ababaian / LIONS
  LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…
  ☆30Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆29Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 7 years ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Updated 2 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆17Updated 6 months ago
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆29Updated last year
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆24Updated 2 years ago
• honzee / RNAseqCNV
  R package for large-scale CNV analysis from RNA-seq
  ☆19Updated 2 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆34Updated 2 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆20Updated 4 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated last month
• smangul1 / rop
  The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…
  ☆36Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated 2 years ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated last month
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 2 years ago