Alternatives and similar repositories for mhc-hammer:

Users that are interested in mhc-hammer are comparing it to the libraries listed below

• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆13Updated 2 months ago
• genemine / iread
  iread
  ☆23Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆21Updated last year
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆18Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last month
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆20Updated 2 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 5 months ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated 8 months ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆17Updated 4 months ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 5 years ago
• gagneurlab / absplice
  ☆33Updated 4 months ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆26Updated 2 years ago
• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆10Updated 3 years ago
• slagtermaarten / LOHHLA
  Fork of https://bitbucket.org/mcgranahanlab/lohhla
  ☆16Updated 4 years ago
• flemingtonlab / SpliceTools
  ☆18Updated 5 months ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆28Updated 5 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• mskilab-org / nf-jabba
  ☆13Updated 6 months ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 6 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆26Updated last year
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆10Updated 8 months ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆12Updated 5 years ago
• hoffmangroup / umap
  ☆25Updated 9 months ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• Xinglab / rMATS-long
  ☆25Updated last month