McGranahanLab / mhc-hammerLinks
Pipeline to detect HLA disruption from WES and RNAseq data
☆19Updated 5 months ago
Alternatives and similar repositories for mhc-hammer
Users that are interested in mhc-hammer are comparing it to the libraries listed below
Sorting:
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- ☆23Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- Comprehensive and scalable differential splicing analyses☆17Updated 5 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 10 months ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- ☆17Updated last year
- R package for large-scale CNV analysis from RNA-seq☆15Updated last year
- ☆15Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆16Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆29Updated 4 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 3 years ago