Pipeline to detect HLA disruption from WES and RNAseq data
☆22Feb 17, 2025Updated last year
Alternatives and similar repositories for mhc-hammer
Users that are interested in mhc-hammer are comparing it to the libraries listed below
Sorting:
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks☆12Jan 9, 2024Updated 2 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆14Oct 8, 2024Updated last year
- ☆14Nov 3, 2021Updated 4 years ago
- ☆14Apr 20, 2023Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- ☆11May 26, 2023Updated 2 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 5 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- ☆15Apr 10, 2024Updated last year
- A language model suite for numbering antigen receptor sequences.☆38Mar 1, 2026Updated last week
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 10 months ago
- ☆21Apr 16, 2024Updated last year
- Kourami: Graph-guided assembly for HLA alleles☆39May 21, 2019Updated 6 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 4 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated 2 months ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- ☆23Mar 20, 2024Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆56Oct 9, 2025Updated 4 months ago
- ☆48Jan 7, 2025Updated last year
- ☆23May 31, 2022Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 4 months ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Sep 15, 2025Updated 5 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 3 years ago
- ☆23Updated this week
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆31Feb 9, 2026Updated 3 weeks ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Feb 10, 2026Updated 3 weeks ago