☆120Sep 5, 2023Updated 2 years ago
Alternatives and similar repositories for scarHRD
Users that are interested in scarHRD are comparing it to the libraries listed below
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆113Apr 23, 2024Updated last year
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- ☆36Jul 28, 2019Updated 6 years ago
- ASCAT R package☆199Feb 12, 2026Updated 3 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 3 weeks ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 5 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- ☆43Feb 9, 2024Updated 2 years ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆77Jul 14, 2022Updated 3 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Sep 16, 2025Updated 5 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 7 months ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆118Aug 19, 2020Updated 5 years ago
- ☆168Feb 23, 2026Updated last week
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆72Jun 26, 2023Updated 2 years ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Jun 30, 2025Updated 8 months ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year
- Precision HLA typing from next-generation sequencing data☆210Mar 5, 2024Updated 2 years ago
- ☆14Dec 13, 2023Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- ☆55Jan 11, 2023Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Aug 14, 2023Updated 2 years ago