sztup / scarHRDLinks
☆119Updated 2 years ago
Alternatives and similar repositories for scarHRD
Users that are interested in scarHRD are comparing it to the libraries listed below
Sorting:
- ☆83Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆113Updated last year
- Software program for checking sample matching for NGS data☆137Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 5 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 10 months ago
- Reference data: BED files, genes, transcripts, variations.☆89Updated 8 years ago
- ☆120Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆157Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆141Updated last month
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- deconstructSigs☆144Updated 2 years ago
- ASCAT R package☆199Updated this week
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆118Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆49Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- Publication quality NGS track plotting☆117Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- ☆43Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- ☆158Updated 8 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated 2 weeks ago