icbi-lab / NeoFuseLinks
NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
☆19Updated 3 years ago
Alternatives and similar repositories for NeoFuse
Users that are interested in NeoFuse are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆23Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- ☆17Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆23Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆16Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ☆25Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- scover☆24Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- A collection of perl scripts for NGS analysis☆16Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 weeks ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆11Updated 11 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year