cancerit / ClusterSVView external linksLinks
SV clustering
☆31Jul 5, 2021Updated 4 years ago
Alternatives and similar repositories for ClusterSV
Users that are interested in ClusterSV are comparing it to the libraries listed below
Sorting:
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Jul 26, 2024Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆11Apr 25, 2024Updated last year
- ☆13Jun 21, 2017Updated 8 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆75Jul 12, 2023Updated 2 years ago
- R pkg for Hierarchical Dirichlet Process☆81Jul 18, 2023Updated 2 years ago
- ASCAT R package☆199Updated this week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- R package containing useful functions for mutational signature analysis☆86Updated this week
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated last month
- structure detection program☆18Nov 20, 2024Updated last year
- Battenberg R package for subclonal copynumber estimation☆95Dec 8, 2025Updated 2 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Aug 22, 2025Updated 5 months ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Jul 19, 2024Updated last year
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 6 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 4 years ago
- ☆13May 2, 2018Updated 7 years ago
- ☆14Oct 9, 2025Updated 4 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 3 months ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆117Updated this week
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago