LukszaLab / NeoantigenEditing
☆14Updated 2 years ago
Alternatives and similar repositories for NeoantigenEditing:
Users that are interested in NeoantigenEditing are comparing it to the libraries listed below
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ☆47Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated 5 months ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- ☆13Updated 4 years ago
- ☆14Updated 2 years ago
- Explore and download data from the recount3 project☆31Updated last month
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆21Updated 6 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 3 years ago
- Summary statistics for repertoires☆16Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 7 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆35Updated 3 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆40Updated 6 years ago
- ☆29Updated 6 years ago
- Materials and scripts for building cell type encyclopedia table☆18Updated 3 weeks ago
- ☆35Updated 6 months ago
- epigenome analysis to rank transcription factors☆30Updated last year