LukszaLab / NeoantigenEditing
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for NeoantigenEditing
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆27Updated 3 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 7 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 5 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ☆46Updated 2 years ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- ☆10Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆17Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ☆14Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- ☆13Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Codes and Data for FFPEsig manuscript☆15Updated 10 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated last month
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 4 years ago
- Course Materials for Genomics Data Mining☆22Updated 2 months ago
- Inference of TCR motifs☆26Updated 3 weeks ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆31Updated last month
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 2 years ago
- ☆33Updated 4 months ago
- ☆40Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated last year