brentp / vcf-benchLinks
evaluating vcf parsing libraries
☆19Updated 3 years ago
Alternatives and similar repositories for vcf-bench
Users that are interested in vcf-bench are comparing it to the libraries listed below
Sorting:
- bioinformatics toolkit in rust☆93Updated 3 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- gia: Genomic Interval Arithmetic☆65Updated last year
- expressions on VCFs☆88Updated 8 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A tool for simulating random mutations in any genome☆43Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- ☆58Updated 2 years ago
- ☆21Updated 11 months ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated 2 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 9 months ago
- Creating alignment plots from bam files☆78Updated last week
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Python language bindings for bwa☆11Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- implicit pangenome graph☆86Updated 2 weeks ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 11 months ago
- ☆20Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆27Updated last week