brentp / vcf-benchLinks
evaluating vcf parsing libraries
☆19Updated 3 years ago
Alternatives and similar repositories for vcf-bench
Users that are interested in vcf-bench are comparing it to the libraries listed below
Sorting:
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- vembrane filters VCF records using python expressions☆60Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Fast sequencing data quality metrics☆26Updated 3 weeks ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 3 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- ☆22Updated last month
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- Quality of life improvements for Bioinformatics in Python.☆29Updated 2 weeks ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- ☆24Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year