Alternatives and similar repositories for vcf-bench:

Users that are interested in vcf-bench are comparing it to the libraries listed below

• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 10 months ago
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆48Updated 2 weeks ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 9 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated this week
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 3 years ago
• EGA-archive / ont2cram
  Oxford Nanopore HDF/Fast5 to CRAM conversion tool
  ☆22Updated 5 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• PacificBiosciences / pbAA
  ☆24Updated 2 months ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆50Updated 4 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆41Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 5 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆30Updated 4 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆50Updated last month
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated last week
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 3 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 3 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆29Updated 9 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago