Super-fast and accurate demultiplexing of direct RNA-seq runs.
☆20Apr 7, 2026Updated 2 months ago
Alternatives and similar repositories for SeqTagger
Users that are interested in SeqTagger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Apr 26, 2026Updated last month
- GPU CRF-CTC decoding for nanopore basecalling☆15Jun 1, 2026Updated 2 weeks ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- interactive plots for differential expression analysis☆35Apr 30, 2026Updated last month
- ☆12Jun 3, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Jun 11, 2026Updated last week
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 9 months ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16May 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 12, 2026Updated last week
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 9 months ago
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- An R Interface to Large Language Models☆28Sep 21, 2025Updated 8 months ago
- long read RNA-seq quantification☆112Jun 7, 2026Updated last week
- ☆12Mar 21, 2026Updated 2 months ago
- A simplified version of Dorado built on top of S/BLOW5 format.☆39Jun 4, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GUI for inspecting POD5 files☆34Dec 19, 2024Updated last year
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Single-cell analysis methods in Rust☆35Nov 4, 2025Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- A collaborative notebook for genes and genomes☆13Jun 11, 2026Updated last week
- Bayesian model selection approach for mediation☆12Apr 17, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆39May 12, 2026Updated last month
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 2 weeks ago
- VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupy…☆40Apr 29, 2026Updated last month
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago