Alternatives and similar repositories for SeqTagger

Users that are interested in SeqTagger are comparing it to the libraries listed below

• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆59Updated 11 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆45Updated this week
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆13Updated 4 months ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆34Updated last year
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆51Updated 2 months ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆55Updated 7 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 8 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• Psy-Fer / deeplexicon
  Signal based nanopore RNA demultiplexing with convolutional neural networks
  ☆39Updated last year
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 3 years ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆18Updated 4 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆82Updated 5 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last month
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆49Updated 2 months ago
• epi2me-labs / wf-basecalling
  ☆48Updated last month
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆99Updated 3 weeks ago
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆40Updated 2 months ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆72Updated 4 months ago
• epi2me-labs / modbam2bed
  ☆52Updated 4 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆93Updated 2 weeks ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆41Updated last week
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆60Updated last year
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆35Updated 5 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆43Updated 2 weeks ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last week