Super-fast and accurate demultiplexing of direct RNA-seq runs.
☆20Jul 22, 2025Updated 8 months ago
Alternatives and similar repositories for SeqTagger
Users that are interested in SeqTagger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Mar 3, 2026Updated 3 weeks ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- interactive plots for differential expression analysis☆34Jun 19, 2025Updated 9 months ago
- ☆12Jun 23, 2025Updated 9 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Nov 21, 2025Updated 4 months ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated 7 months ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 6 months ago
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated 11 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- An R Interface to Large Language Models☆27Sep 21, 2025Updated 6 months ago
- long read RNA-seq quantification☆108Mar 16, 2026Updated 2 weeks ago
- ☆11Mar 21, 2026Updated last week
- A simplified version of Dorado built on top of S/BLOW5 format.☆32Mar 18, 2026Updated last week
- GUI for inspecting POD5 files☆34Dec 19, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- A collaborative notebook for genes and genomes☆13Updated this week
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 3 years ago
- Bayesian model selection approach for mediation☆12Apr 17, 2023Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆39Mar 17, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆44Mar 23, 2026Updated last week
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- Analysis and Visualization of Ribosome Profiling Data☆31Aug 29, 2025Updated 7 months ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year