novoalab / SeqTagger
Super-fast and accurate demultiplexing of direct RNA-seq runs.
☆13Updated 2 months ago
Alternatives and similar repositories for SeqTagger
Users that are interested in SeqTagger are comparing it to the libraries listed below
Sorting:
- GUI for inspecting POD5 files☆28Updated 4 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated last month
- Python bindings for the TaxonKit library☆39Updated this week
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 6 years ago
- ☆11Updated 4 years ago
- Add biological annotations to variants in a given VCF file.☆30Updated 3 years ago
- Nail is an Alignment Inference tooL☆47Updated last week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated 2 months ago
- Codes and results from ONT dRNA benchmarking☆11Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆57Updated last year
- Find Unique genomic Regions☆29Updated last month
- Linear-time de novo Long Read Assembler☆40Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 4 months ago
- A local-haplotagging-based small and structural variant caller☆76Updated this week
- Convert genbank files to a swath of other formats☆18Updated last year
- Master of Pores 2☆23Updated 5 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆30Updated last year
- ☆27Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆34Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago