novoalab / SeqTaggerLinks
Super-fast and accurate demultiplexing of direct RNA-seq runs.
☆13Updated 2 weeks ago
Alternatives and similar repositories for SeqTagger
Users that are interested in SeqTagger are comparing it to the libraries listed below
Sorting:
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆38Updated 3 weeks ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- GUI for inspecting POD5 files☆30Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆52Updated 2 weeks ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆31Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated 2 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Nail is an Alignment Inference tooL☆48Updated last week
- Convert genbank files to a swath of other formats☆18Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Updated 8 months ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- ☆28Updated 3 years ago
- ☆30Updated last year
- Linear-time de novo Long Read Assembler☆40Updated 5 months ago