LRB-IIMCB / ninetailsLinks
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
☆9Updated 2 months ago
Alternatives and similar repositories for ninetails
Users that are interested in ninetails are comparing it to the libraries listed below
Sorting:
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Updated 2 months ago
- Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads☆9Updated last year
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆13Updated 3 weeks ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆9Updated 9 months ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆12Updated 7 months ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Updated last year
- Frequently used commands in Bioinformatics☆21Updated 6 months ago
- ☆17Updated last week
- A tutorial on structural variant calling for short read sequencing data☆39Updated 8 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆11Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆13Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆10Updated 4 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 10 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated 11 months ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆15Updated last month
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- ☆79Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 3 months ago
- A collection of modules and sub-workflows for Nextflow☆27Updated this week
- high-performance BED-to-GTF converter written in Rust☆15Updated 7 months ago
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆23Updated last week
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆31Updated last week