Alternatives and similar repositories for ninetails

Users that are interested in ninetails are comparing it to the libraries listed below

• niaid / virome-pipeline
  This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
  ☆12Updated 9 months ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 3 years ago
• tobiasrausch / nRex
  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
  ☆12Updated 4 months ago
• daisybio / TF-Prioritizer
  Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
  ☆14Updated last year
• davidlougheed / strkit
  A short tandem repeat (STR) genotyping and analysis toolkit for long reads
  ☆15Updated this week
• denisbeslic / BacterialGenomeAnalysis
  Automated pipeline for whole bacterial genome analysis based on snakemake
  ☆11Updated 3 years ago
• genomicsITER / one-liners
  Frequently used commands in Bioinformatics
  ☆21Updated last week
• joonan-lab / cwas
  Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)
  ☆10Updated 6 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• MultiQC / test-data
  Test data for MultiQC.
  ☆21Updated last week
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• vinuesa / TIB-filoinfo
  Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
  ☆26Updated last month
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated last week
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆22Updated last year
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 3 months ago
• YoukaiFromAccounting / skandiver
  skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…
  ☆13Updated last month
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 11 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆39Updated 10 months ago
• novoalab / SeqTagger
  Super-fast and accurate demultiplexing of direct RNA-seq runs.
  ☆17Updated last month
• bioinformatics-core-shared-training / Bulk_RNAseq_Course_Base
  ☆19Updated 2 months ago
• mbhall88 / container_recipes
  Repository with all my container recipes 👩‍🍳
  ☆17Updated last year
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆30Updated last week
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆24Updated last year
• ARTbio / tools-artbio
  Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
  ☆12Updated 6 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆12Updated 4 months ago
• MHH-RCUG / Wochenende
  Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
  ☆37Updated 3 years ago
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 2 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆54Updated 6 months ago