UMCUGenetics / sturgeonView external linksLinks
Sturgeon is a CNS neural network classifier
☆45Jan 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for sturgeon
Users that are interested in sturgeon are comparing it to the libraries listed below
Sorting:
- ☆19Nov 21, 2025Updated 2 months ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 4 months ago
- Basecalling configuration prediction through FASTQ files☆32Nov 24, 2025Updated 2 months ago
- ☆30Jul 28, 2025Updated 6 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆16Mar 3, 2025Updated 11 months ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Aug 1, 2025Updated 6 months ago
- ☆11Nov 17, 2020Updated 5 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 2 months ago
- Test data for MultiQC.☆24Dec 21, 2025Updated last month
- consensus approach for community profiling with nanopore amplicon sequencing data☆15Sep 30, 2024Updated last year
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- ☆11May 6, 2021Updated 4 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 2 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- Minotour API, web and client code☆30Feb 15, 2023Updated 2 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated last week
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Jan 31, 2026Updated 2 weeks ago
- ☆10Dec 28, 2023Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 3 months ago
- ☆15Aug 8, 2025Updated 6 months ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆18Dec 12, 2025Updated 2 months ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- A package to run real time analysis of nanopore methylation data.☆20Jan 27, 2026Updated 2 weeks ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Dec 24, 2025Updated last month
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- Compare the quality of multiple genomes, along with their annotations.☆20Jan 15, 2026Updated 3 weeks ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60May 23, 2019Updated 6 years ago
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 5 months ago
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 4 months ago