biocorecrg / master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
☆93Updated last month
Related projects ⓘ
Alternatives and complementary repositories for master_of_pores
- A tool to identify, orient, trim and rescue full length cDNA reads☆80Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- ☆105Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆148Updated 11 months ago
- ☆151Updated 2 months ago
- ☆76Updated 4 years ago
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- ☆34Updated last week
- Research release basecalling models and configurations☆103Updated 5 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆145Updated 3 weeks ago
- ☆76Updated last week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆137Updated 2 weeks ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- ☆48Updated 2 months ago
- ☆111Updated last week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 6 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Python programs for processing GFF3 files☆95Updated 7 months ago
- Constructing a pangenome gene graph☆174Updated 4 months ago