nleroy917 / optipyzerLinks
Multi-Species Codon Optimization Engine
☆27Updated 2 months ago
Alternatives and similar repositories for optipyzer
Users that are interested in optipyzer are comparing it to the libraries listed below
Sorting:
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago
- Evolutionary conservation estimation of residues or nucleotides☆48Updated 3 years ago
- Code for LazyAF pipeline☆20Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- Fast protein domain structure embedding+search tool☆25Updated 2 weeks ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- ☆80Updated 2 years ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- Next generation sequence parameter library for proteins☆35Updated 3 weeks ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A pipeline to build similarity maps of protein space☆38Updated 2 weeks ago
- Codon optimizer for tissue-specific expression☆17Updated last year
- An atlas of CRISPR-Cas systems from systematic genome mining☆19Updated 2 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago