nleroy917 / optipyzerLinks
Multi-Species Codon Optimization Engine
☆27Updated last month
Alternatives and similar repositories for optipyzer
Users that are interested in optipyzer are comparing it to the libraries listed below
Sorting:
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Code for LazyAF pipeline☆20Updated last year
- ☆77Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Next generation sequence parameter library for proteins☆35Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆47Updated 3 years ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- HLA-I ligand predictor☆42Updated 8 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Evolutionary velocity with protein language models☆94Updated last year
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Fast protein domain structure embedding+search tool☆25Updated 3 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 11 months ago
- Codon optimizer for tissue-specific expression☆17Updated 11 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆147Updated 9 months ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago