Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence space.
β18Mar 6, 2026Updated last month
Alternatives and similar repositories for ProteinClusterTools
Users that are interested in ProteinClusterTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).β32May 16, 2025Updated 11 months ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri β¦β17Nov 27, 2025Updated 5 months ago
- a pipeline to cluster proteins into familiesβ10Apr 1, 2020Updated 6 years ago
- Python framework for doing ancestral sequence reconstructionβ43Mar 20, 2026Updated last month
- Machine learning prediction of enzyme optimum pHβ54Apr 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Benchmarking scripts for Gaiaβ15Apr 10, 2025Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMsβ27Aug 23, 2022Updated 3 years ago
- β12Aug 6, 2024Updated last year
- A predictor of enzyme optimal temperatureβ16Mar 13, 2025Updated last year
- Molecular dynamics workflow framework in python.β13Nov 15, 2022Updated 3 years ago
- A collection of tutorials for the python implementation of Dynamical Network Analysisβ15Aug 6, 2025Updated 8 months ago
- Simple python interface for the OpenProtein.AI REST API.β15Mar 19, 2026Updated last month
- Protein solubility prediction toolsβ23Dec 13, 2024Updated last year
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Liβ¦β17May 23, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β75Mar 23, 2026Updated last month
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.β13Nov 24, 2023Updated 2 years ago
- Protein prediction models implemented with Modalβ32Updated this week
- DataHack Challenges - Challenges offered during our hackathon by top data companies.β12Jan 28, 2020Updated 6 years ago
- β21Oct 31, 2024Updated last year
- Python toolkit and package for analyzing enzyme activity dataβ10Jun 17, 2022Updated 3 years ago
- β37Jun 17, 2025Updated 10 months ago
- β15May 1, 2025Updated 11 months ago
- β17Jun 15, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prediction of glycopeptide fragment mass spectra by deep learningβ11Feb 20, 2024Updated 2 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.β32Apr 21, 2026Updated last week
- ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)β13Nov 7, 2025Updated 5 months ago
- Deep learning based prediction of temperature dependent enzyme turnover ratesβ17Nov 24, 2024Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.β22Jun 26, 2023Updated 2 years ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 styleβ17Dec 19, 2025Updated 4 months ago
- This repository contains the positive-unlabeled learning-based enzyme promiscuity prediction model as described in the paper Deep learninβ¦β17Feb 16, 2025Updated last year
- β16Apr 1, 2025Updated last year
- DNA overhang misannealing data for Pythonβ13May 15, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ProtSpace is program that helps in visualizing and investigating our protein embedding space.β47Apr 19, 2026Updated last week
- β23Mar 26, 2026Updated last month
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure predictionβ35Mar 18, 2025Updated last year
- Automated construction of protein chimeras and their analysis.β14Sep 29, 2023Updated 2 years ago
- β12Dec 10, 2024Updated last year
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."β37Nov 18, 2025Updated 5 months ago
- β17Mar 24, 2026Updated last month