Alternatives and similar repositories for sg-nex-data:

Users that are interested in sg-nex-data are comparing it to the libraries listed below

• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆142Updated last year
• epi2me-labs / wf-transcriptomes
  ☆88Updated 2 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆118Updated last week
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆208Updated last week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆206Updated last week
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆141Updated last month
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆96Updated last month
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆73Updated this week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆199Updated last week
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆159Updated this week
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆197Updated 3 months ago
• mortazavilab / TALON
  Technology agnostic long read analysis pipeline for transcriptomes
  ☆140Updated last year
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆212Updated 8 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆109Updated last month
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆68Updated last year
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆65Updated 7 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆144Updated 9 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 3 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆207Updated 2 months ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆85Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆137Updated last week
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆105Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆117Updated this week
• epi2me-labs / wf-human-variation
  ☆112Updated this week
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆80Updated last week
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago