mritchielab / GlimmaV2Links
interactive plots for differential expression analysis
☆34Updated 2 months ago
Alternatives and similar repositories for GlimmaV2
Users that are interested in GlimmaV2 are comparing it to the libraries listed below
Sorting:
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last week
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Comprehensive Human Expressed SequenceS☆18Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated this week
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 2 months ago
- iread☆25Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- DriverPower☆26Updated 7 months ago
- Calculate and plot distributions of genomic ranges☆26Updated 4 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- ☆33Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago