Alternatives and similar repositories for GlimmaV2:

Users that are interested in GlimmaV2 are comparing it to the libraries listed below

• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• Xinglab / rMATS-long
  ☆28Updated 3 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 8 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆22Updated 4 months ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆24Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 6 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• julienrichardalbert / MEA
  ☆9Updated 5 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• genemine / iread
  iread
  ☆24Updated 3 years ago
• NBISweden / workshop-mlbiostatistics
  ☆16Updated this week
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆39Updated 2 weeks ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 7 months ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 10 months ago
• zanglab / SICER2
  ☆21Updated last month
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated 6 months ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 9 months ago