Alternatives and similar repositories for seqkit

Users that are interested in seqkit are comparing it to the libraries listed below

• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• wdecoster / kyber
  ☆21Updated 6 months ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆26Updated 11 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 7 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 9 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 7 months ago
• jts / mbtools
  ☆14Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 3 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 6 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆43Updated last year
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated 2 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• timmassingham / simNGS
  Simulate short-reads datasets using probabilistic models
  ☆11Updated 12 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• guigolab / tmerge
  Merge transcriptome read-to-genome alignments into non-redundant transcript models
  ☆18Updated last year
• COMBINE-lab / grouper
  ☆16Updated 6 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆35Updated 2 months ago