annalam / seqkitLinks
Toolkit for manipulating FASTA and SAM files
☆20Updated last year
Alternatives and similar repositories for seqkit
Users that are interested in seqkit are comparing it to the libraries listed below
Sorting:
- A FASTA/FASTQ format parser library☆20Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- ☆21Updated 9 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- ☆14Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 weeks ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Python3 module for running MUMmer and reading the output☆33Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Find Unique genomic Regions☆30Updated last week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Structural variant (SV) analysis tools☆38Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated 2 weeks ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- A tool for simulating random mutations in any genome☆42Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆29Updated 4 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- ☆45Updated 2 weeks ago
- Add biological annotations to variants in a given VCF file.☆32Updated 4 years ago