☆15Apr 19, 2018Updated 7 years ago
Alternatives and similar repositories for metaOthello
Users that are interested in metaOthello are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Better Sequencing Simulator for Metagenomics☆20May 8, 2020Updated 5 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 6 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 2 months ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 2 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- ☆49Mar 19, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 8 months ago
- DDBJ Fast Annotation and Submission Tool☆85Apr 10, 2026Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago