xa6xa6 / metaOthello
☆16Updated 6 years ago
Alternatives and similar repositories for metaOthello:
Users that are interested in metaOthello are comparing it to the libraries listed below
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Genomic Assemblies Merger for NGS☆26Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 4 months ago
- ☆19Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆15Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆15Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Variant call adjudication☆16Updated 8 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- De novo VIral Genome Annotator☆21Updated 5 months ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- blast, shmlast☆21Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 3 months ago
- ☆32Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 8 months ago