noamteyssier / adpbulk
pseudobulking on an AnnData object
☆30Updated 2 months ago
Alternatives and similar repositories for adpbulk
Users that are interested in adpbulk are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆78Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- Single cell omics biology annotations☆51Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- ☆35Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆35Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- ☆40Updated 4 years ago
- ☆51Updated 8 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- ☆55Updated 6 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 8 months ago
- Unified access to several second-generation deconvolution methods☆71Updated last week
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- ☆41Updated this week
- ☆31Updated 3 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆28Updated last year
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 10 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- ☆46Updated 2 years ago