noamteyssier / adpbulkLinks
pseudobulking on an AnnData object
☆32Updated 4 months ago
Alternatives and similar repositories for adpbulk
Users that are interested in adpbulk are comparing it to the libraries listed below
Sorting:
- Single cell omics biology annotations☆51Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆69Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- ☆55Updated 7 years ago
- ☆35Updated 10 months ago
- ☆79Updated last week
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- Functional Inference of Gene Regulation☆45Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆78Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- ☆44Updated last week
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- ☆55Updated last month
- Single-Cell Clustering Assessment Framework☆103Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆111Updated 2 months ago
- Clonotype Neighbor Graph Analysis☆89Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- Geometry-preserving random sampling☆89Updated 8 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago