noamteyssier / adpbulkLinks
pseudobulking on an AnnData object
☆32Updated 3 months ago
Alternatives and similar repositories for adpbulk
Users that are interested in adpbulk are comparing it to the libraries listed below
Sorting:
- ☆35Updated 9 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆54Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Single cell omics biology annotations☆51Updated 2 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆76Updated last month
- A method for analyzing scATAC-seq experiments.☆31Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- ☆35Updated 3 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- R implementation of GeneTrajectory☆59Updated last year
- ☆41Updated 2 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- ☆41Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated this week
- ☆42Updated 2 weeks ago
- ☆78Updated this week
- Finding gene expression states in scRNA-seq data☆51Updated last year