pseudobulking on an AnnData object
☆35Mar 14, 2025Updated last year
Alternatives and similar repositories for adpbulk
Users that are interested in adpbulk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 4 months ago
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated 2 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated last year
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Build contrasts for models defined with formulaic☆12Apr 27, 2026Updated last week
- Code and example of the D-SPIN framework☆26Mar 12, 2026Updated last month
- ☆12Mar 18, 2026Updated last month
- Matplotlib style for scientific publications☆14Apr 27, 2026Updated last week
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 6 months ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- ☆28Apr 1, 2025Updated last year
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- ☆28Apr 15, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- pygor3 repository☆10Nov 20, 2025Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆30Jan 29, 2026Updated 3 months ago
- Compendium of tools for the Imaging Platform☆15Apr 28, 2026Updated last week
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆15Apr 14, 2025Updated last year
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 2 weeks ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Conversion between scRNA-seq objects☆207Apr 16, 2026Updated 3 weeks ago
- Collection of analysis tools for quantitative trait loci☆65Apr 26, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆222Mar 2, 2026Updated 2 months ago
- Robust Allele Specific Quantification and quality controL☆41Dec 13, 2021Updated 4 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆94Apr 30, 2026Updated last week
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆25Updated this week
- This is the alpha version of the CellOracle package☆448Apr 30, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated 3 weeks ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- ☆96Aug 12, 2024Updated last year
- Multi-omics factor analysis v2☆64Apr 23, 2026Updated 2 weeks ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- Python package to perform enrichment analysis from omics data.☆267Updated this week
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year