pseudobulking on an AnnData object
☆37Jun 17, 2026Updated 3 months ago
Alternatives and similar repositories for adpbulk
Users that are interested in adpbulk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 3 months ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 7 months ago
- pytorch dataloaders for single-cell perturbation data☆54Jul 18, 2026Updated 2 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Build contrasts for models defined with formulaic☆13Sep 21, 2026Updated last week
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 months ago
- Functional and Learnable Cell dynamicS☆22May 13, 2025Updated last year
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆26Aug 28, 2026Updated last month
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Sep 16, 2026Updated last week
- ☆12Mar 18, 2026Updated 6 months ago
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated last month
- Conveniently process a dictionary of anndatas☆23Updated this week
- Matplotlib style for scientific publications☆15Aug 31, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated 11 months ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- Compendium of tools for the Imaging Platform☆16Aug 20, 2026Updated last month
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆16Sep 20, 2026Updated last week
- ☆17Mar 6, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 5 years ago
- Collection of analysis tools for quantitative trait loci☆66Sep 20, 2026Updated last week
- ☆18Apr 23, 2026Updated 5 months ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Exact biosequence alignment and folding on GPUs — Needleman-Wunsch, Smith-Waterman, Levenshtein, Zuker, and Sankoff with Gotoh adjustment…☆33Aug 25, 2026Updated last month
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 4 months ago
- Robust Allele Specific Quantification and quality controL☆42Dec 13, 2021Updated 4 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆246Mar 2, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- Toolkit for single-cell DNA methylation analysis.☆50May 25, 2026Updated 4 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆100Apr 30, 2026Updated 4 months ago
- Jupyter Notebook extension that adds collapsable cells.☆10Jun 21, 2020Updated 6 years ago
- ☆20Updated this week
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago