linsalrob / genbank_to
Convert genbank files to a swath of other formats
☆18Updated last year
Alternatives and similar repositories for genbank_to:
Users that are interested in genbank_to are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Genome size estimation from long read overlaps☆55Updated 3 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆31Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 3 weeks ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Quality control plotting for long reads☆10Updated 11 months ago
- Colinear block visualisation tool☆30Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 4 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated this week
- Remove human reads from a sequencing run☆40Updated 7 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago