linsalrob / genbank_to
Convert genbank files to a swath of other formats
☆16Updated last year
Alternatives and similar repositories for genbank_to:
Users that are interested in genbank_to are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated 2 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 2 weeks ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Colinear block visualisation tool☆30Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated last month
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- ☆25Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated 2 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Bacterial GWAS analysis☆37Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated last week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 3 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 7 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 6 months ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- Gene-flank analysis tool☆27Updated 3 months ago
- tree visualization for tree + annotation data☆31Updated last week