Genomic interval machine learning
☆22Jul 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for geniml
Users that are interested in geniml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ITS region extraction for long-read amplicon sequencing☆19Jul 28, 2026Updated last week
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- Modular job submitter for arbitrary pipelines or commands.☆26Updated this week
- A web API and database for biological sample metadata☆22Updated this week
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 4 years ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆28Updated this week
- Project metadata manager for biological sample metadata in Python☆40Updated this week
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month
- Builds a PEP from SRA or GEO accessions☆55Apr 12, 2026Updated 3 months ago
- ☆11Jan 7, 2020Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Jul 18, 2026Updated 3 weeks ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- just get your chrom sizes☆15Mar 17, 2026Updated 4 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 3 years ago
- ☆14Sep 1, 2024Updated last year
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 5 months ago
- Container class to represent genomic locations and support genomic analysis☆27Aug 3, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- DMR Identification Tool☆35Jul 6, 2023Updated 3 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆20May 24, 2025Updated last year
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A high-performance BigWig and BigBed library in Rust☆119Jul 6, 2026Updated last month
- ☆10Nov 4, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- A modular, containerized pipeline for PRO-seq data processing☆12Mar 6, 2026Updated 5 months ago
- CWL experimental grammar☆11Nov 16, 2025Updated 8 months ago
- A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions☆26Mar 9, 2023Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 5 years ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 4 months ago