Genomic interval machine learning
☆22Mar 11, 2026Updated last month
Alternatives and similar repositories for geniml
Users that are interested in geniml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- A web API and database for biological sample metadata☆22Apr 19, 2026Updated 3 weeks ago
- Modular job submitter for arbitrary pipelines or commands.☆26Apr 11, 2026Updated 3 weeks ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆27Apr 20, 2026Updated 2 weeks ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 4 years ago
- Project metadata manager for PEPs in Python☆40Apr 1, 2026Updated last month
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Builds a PEP from SRA or GEO accessions☆54Apr 12, 2026Updated 3 weeks ago
- ☆11Jan 7, 2020Updated 6 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 4 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 3 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- A mosaic genome painting tool for plant genomes☆18Updated this week
- ☆14Sep 1, 2024Updated last year
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 2 months ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- DMR Identification Tool☆34Jul 6, 2023Updated 2 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆20May 24, 2025Updated 11 months ago
- A high-performance BigWig and BigBed library in Rust☆115Updated this week
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated 11 months ago
- ☆10Nov 4, 2021Updated 4 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Apr 28, 2026Updated last week
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions☆25Mar 9, 2023Updated 3 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 5 months ago
- Assembled Genomes Compressor☆180Updated this week
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Fast approximate string searching☆124Updated this week
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year