Transipedia / dekupl-run
Identify differentially expressed k-mers between RNA-Seq datasets
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for dekupl-run
- ☆21Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- ☆12Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆23Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Immuological gene typing and annotation for genome assembly☆31Updated 3 weeks ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A program for the analysis of single cell nanopore long read data☆13Updated 3 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- ☆39Updated last month
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆18Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 4 months ago
- processing 10x genomics reads☆23Updated 5 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆20Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago