Transipedia / dekupl-run
Identify differentially expressed k-mers between RNA-Seq datasets
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for dekupl-run
- ☆21Updated 2 weeks ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆31Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Adapters for trimming☆30Updated 5 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Find and characterise transposable element insertions☆21Updated last year
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- ☆21Updated 3 months ago
- Tools to process LIANTI sequence data☆23Updated 5 years ago
- ☆21Updated 5 months ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- A program for summarising CpG methylation patterns☆19Updated 8 years ago
- A program for the analysis of single cell nanopore long read data☆13Updated 4 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆22Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago