Transipedia / dekupl-runLinks
Identify differentially expressed k-mers between RNA-Seq datasets
☆11Updated 4 years ago
Alternatives and similar repositories for dekupl-run
Users that are interested in dekupl-run are comparing it to the libraries listed below
Sorting:
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- ☆22Updated 5 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ☆18Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Find and characterise transposable element insertions☆21Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆40Updated 8 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- ☆22Updated 2 weeks ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year