Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
☆27Jul 19, 2022Updated 4 years ago
Alternatives and similar repositories for coessentiality
Users that are interested in coessentiality are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- Modeling of time series data for CRISPR KO experiments☆42Updated this week
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 4 months ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- Python Client Library for the G2P Portal API☆15Oct 28, 2026Updated last week
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆74Jun 6, 2020Updated 6 years ago
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆128Jul 17, 2026Updated 3 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Mar 21, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated 4 months ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Jupyter Notebook extension that adds collapsable cells.☆10Jun 21, 2020Updated 6 years ago
- Package to Score Sequences using Rule Set 3☆18Nov 10, 2025Updated 11 months ago
- ☆13Jan 8, 2026Updated 9 months ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- ☆21Jul 6, 2023Updated 3 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆164Oct 29, 2026Updated last week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆31Apr 16, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Application for semi-automated genomic annotation.☆20Jun 10, 2026Updated 4 months ago
- ☆29Sep 4, 2023Updated 3 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- personal genome constructor☆11May 29, 2025Updated last year
- ☆13Oct 29, 2025Updated last year
- Python implementation for investigating the reliability of ICA estimates by clustering and visualization☆19Apr 21, 2022Updated 4 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Mar 5, 2021Updated 5 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆14Sep 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Oct 12, 2026Updated 3 weeks ago
- Analysies of gene expression data using Gene Ontology☆10Sep 3, 2025Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆35Sep 25, 2026Updated last month
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated last year
- mesa package for Methylation Enrichment Sequencing Analysis☆16Updated this week
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month