kundajelab / coessentialityLinks
Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
☆27Updated 3 years ago
Alternatives and similar repositories for coessentiality
Users that are interested in coessentiality are comparing it to the libraries listed below
Sorting:
- A Python package for gene network analysis☆32Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- ☆38Updated last year
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Summary statistics for repertoires☆17Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- ☆20Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- 📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.☆21Updated last year
- ☆29Updated 3 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 6 months ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆33Updated 2 months ago
- ☆18Updated 5 months ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago
- flexible CDR based distance metrics☆67Updated last year
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- ☆23Updated 6 months ago
- VDJ Clonotyping & Analysis Tools☆49Updated 6 months ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- DRUGZ software☆23Updated 4 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated last month