ding-lab / msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
☆127Updated 4 years ago
Alternatives and similar repositories for msisensor:
Users that are interested in msisensor are comparing it to the libraries listed below
- Microsatellite instability (MSI) detection for tumor only data.☆97Updated 8 months ago
- ☆108Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆104Updated 2 months ago
- ☆38Updated 11 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆69Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago
- ☆71Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- Software program for checking sample matching for NGS data☆126Updated 6 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- ASCAT R package☆173Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆139Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- ☆116Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆121Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 2 months ago
- ☆136Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 5 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- Annotates variants in MAF with OncoKB annotation.☆126Updated 3 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆139Updated 7 months ago
- WisecondorX — An evolved WISECONDOR☆94Updated 4 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago