BoevaLab / FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
☆153Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for FREEC
- A structural variation pipeline for short-read sequencing☆172Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆154Updated last year
- Annotation and Ranking of Structural Variation☆221Updated 2 months ago
- Structural variation and indel detection by local assembly☆237Updated this week
- VarDict☆188Updated 10 months ago
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 7 months ago
- ASCAT R package☆170Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Gene fusion detection and visualization☆115Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated 3 weeks ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆143Updated 3 months ago
- Software program for checking sample matching for NGS data☆126Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seq☆111Updated 4 months ago
- WisecondorX — An evolved WISECONDOR☆94Updated 2 months ago
- ABRA2☆91Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated this week
- a lightweight bam file depth statistical tool☆147Updated 2 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆164Updated 5 months ago
- ☆76Updated last week
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆126Updated 3 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- SV detection from paired end reads mapping☆114Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago