BoevaLab / FREECLinks
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
☆161Updated 10 months ago
Alternatives and similar repositories for FREEC
Users that are interested in FREEC are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆230Updated last month
- Structural variation and indel detection by local assembly☆246Updated last week
- A structural variation pipeline for short-read sequencing☆189Updated this week
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- VarDict☆198Updated last year
- ASCAT R package☆181Updated 3 months ago
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆152Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- a lightweight bam file depth statistical tool☆150Updated 9 months ago
- Software program for checking sample matching for NGS data☆132Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last month
- ABRA2☆92Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- ☆95Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Annotation and Ranking of Structural Variation☆260Updated 3 months ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- WisecondorX — An evolved WISECONDOR☆98Updated 9 months ago