gavinha / TitanCNALinks
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
☆97Updated 4 years ago
Alternatives and similar repositories for TitanCNA
Users that are interested in TitanCNA are comparing it to the libraries listed below
Sorting:
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- ☆69Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated 3 weeks ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆72Updated 9 months ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Software program for checking sample matching for NGS data☆132Updated last year
- ☆41Updated last year
- ☆73Updated 2 months ago
- Burden testing against public controls☆50Updated last year
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- phasing and Allele Specific Expression from RNA-seq☆115Updated 11 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Tumor Mutational Burden☆58Updated 9 months ago
- ☆21Updated 2 weeks ago
- An R package to time somatic mutations☆62Updated 4 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago