gavinha / TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
☆97Updated 3 years ago
Alternatives and similar repositories for TitanCNA:
Users that are interested in TitanCNA are comparing it to the libraries listed below
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last week
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆103Updated 11 months ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- ☆72Updated 11 months ago
- Characterization of Germline variants☆98Updated 3 years ago
- Software program for checking sample matching for NGS data☆129Updated 9 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- ☆67Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- ☆41Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Tumor Mutational Burden☆58Updated 7 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- ☆112Updated last year
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆70Updated 6 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- ☆117Updated last year
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago