Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
☆101Apr 20, 2021Updated 5 years ago
Alternatives and similar repositories for TitanCNA
Users that are interested in TitanCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- Battenberg R package for subclonal copynumber estimation☆95May 11, 2026Updated 2 weeks ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆161Feb 12, 2026Updated 3 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 4 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 3 months ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆211Mar 20, 2024Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆147Feb 19, 2026Updated 3 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11May 21, 2024Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆42Jan 30, 2023Updated 3 years ago
- Deduplication based on custom inline DNA barcodes.☆21Aug 17, 2018Updated 7 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- ☆126Sep 5, 2023Updated 2 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆115Oct 12, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 3 months ago
- Structural variation and indel detection by local assembly☆255May 14, 2026Updated 2 weeks ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆76Aug 20, 2021Updated 4 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated last year
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆517Updated this week
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 4 months ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 7 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated last month
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago