Software program for checking sample matching for NGS data
☆142Jun 20, 2024Updated 2 years ago
Alternatives and similar repositories for NGSCheckMate
Users that are interested in NGSCheckMate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆272Sep 21, 2025Updated 10 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆106Jul 9, 2026Updated last week
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Battenberg R package for subclonal copynumber estimation☆98May 11, 2026Updated 2 months ago
- ASCAT R package☆202Feb 12, 2026Updated 5 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆329Updated this week
- Utility functions for FACETS☆40Oct 24, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆57Jan 11, 2023Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆29Jun 12, 2026Updated last month
- BAM Statistics, Feature Counting and Annotation☆155Jul 1, 2026Updated 3 weeks ago
- Count bases in BAM/CRAM files☆326Jul 10, 2026Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆31Jul 12, 2026Updated last week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- ☆44Updated this week
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Personal Cancer Genome Reporter (PCGR)☆281Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- Analysis pipeline for cancer sequencing data☆113Apr 24, 2026Updated 2 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆95Jun 29, 2026Updated 3 weeks ago
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year