parklab / NGSCheckMateLinks
Software program for checking sample matching for NGS data
☆137Updated last year
Alternatives and similar repositories for NGSCheckMate
Users that are interested in NGSCheckMate are comparing it to the libraries listed below
Sorting:
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- ☆116Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆154Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
- Reference data: BED files, genes, transcripts, variations.☆87Updated 7 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆132Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated 2 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated last week
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆113Updated 6 months ago
- ASCAT R package☆189Updated last month
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated last month
- Publication quality NGS track plotting☆114Updated 3 weeks ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago
- Learning the Variant Call Format☆144Updated 2 months ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 3 weeks ago