parklab / NGSCheckMate
Software program for checking sample matching for NGS data
☆129Updated 9 months ago
Alternatives and similar repositories for NGSCheckMate:
Users that are interested in NGSCheckMate are comparing it to the libraries listed below
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- ☆112Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆101Updated 11 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated last year
- WisecondorX — An evolved WISECONDOR☆96Updated 6 months ago
- ☆67Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- ☆116Updated last year
- ASCAT R package☆176Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- ☆71Updated 10 months ago
- A small-RNA sequencing analysis pipeline☆80Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 6 months ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago