Software program for checking sample matching for NGS data
☆138Jun 20, 2024Updated last year
Alternatives and similar repositories for NGSCheckMate
Users that are interested in NGSCheckMate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆262Sep 21, 2025Updated 6 months ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99May 21, 2024Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆305Nov 14, 2025Updated 4 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- ☆55Jan 11, 2023Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆152Mar 16, 2026Updated last week
- Count bases in BAM/CRAM files☆323Jan 31, 2022Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- ☆22Feb 5, 2025Updated last year
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- VarDict Java port☆140Jan 5, 2024Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 5 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Sep 16, 2025Updated 6 months ago