bioinfo-pf-curie / TMB
Tumor Mutational Burden
☆58Updated 7 months ago
Alternatives and similar repositories for TMB:
Users that are interested in TMB are comparing it to the libraries listed below
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- ☆41Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- ☆67Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆70Updated 3 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆107Updated last month
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- ☆41Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- ☆21Updated last week
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- ☆53Updated 2 years ago
- ☆72Updated 11 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆73Updated 8 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆103Updated 11 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- Tip and tricks for BAM files☆85Updated 6 years ago