☆43Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for SGZ
Users that are interested in SGZ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Mar 16, 2021Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- ☆10Jul 16, 2021Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆46Nov 18, 2019Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 6 months ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 6 years ago
- ☆123Sep 5, 2023Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Mar 13, 2026Updated last month
- Annotates variants in MAF with OncoKB annotation.☆141Feb 19, 2026Updated 2 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Somatic variant identification from unpaired samples☆15Jan 31, 2017Updated 9 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆207May 28, 2023Updated 2 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 2 weeks ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Characterization of Germline variants☆101Mar 15, 2022Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 7 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 2 years ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆43Mar 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆514Feb 26, 2026Updated 2 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Personal Cancer Genome Reporter (PCGR)☆276Apr 29, 2026Updated last week
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- ⛏ HLA predictions from NGS shotgun data☆56Mar 27, 2026Updated last month