FoundationMedicineInc / SGZLinks
☆43Updated last year
Alternatives and similar repositories for SGZ
Users that are interested in SGZ are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 8 years ago
- ☆36Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- WisecondorX — An evolved WISECONDOR☆103Updated last month
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆112Updated 6 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- CNV screening and annotation tool☆25Updated 8 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- ☆116Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆57Updated 5 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated last month