mskcc / mimsi
Microsatellite Instability Classification using Multiple Instance Learning
☆24Updated last month
Alternatives and similar repositories for mimsi:
Users that are interested in mimsi are comparing it to the libraries listed below
- Overview of GDC Harmonization Workflows☆29Updated last year
- Explore the cancer relevance of your gene list☆51Updated last month
- Clinical interpretation of somatic mutations in cancer☆45Updated 2 months ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 8 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 2 weeks ago
- ☆19Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆10Updated last week
- ☆23Updated 6 years ago
- ☆40Updated 7 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 3 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- ☆34Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 9 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Published at Bioinformatics☆12Updated 9 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- DriverPower☆26Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Extracting disease-specific genomic coordinates from GWAS catalog☆20Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago