mskcc / mimsiLinks
Microsatellite Instability Classification using Multiple Instance Learning
☆27Updated 11 months ago
Alternatives and similar repositories for mimsi
Users that are interested in mimsi are comparing it to the libraries listed below
Sorting:
- Overview of GDC Harmonization Workflows☆35Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last month
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Published at Bioinformatics☆12Updated last year
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆19Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- ☆16Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Git repo for CONIPHER tree building☆25Updated 10 months ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- DriverPower☆26Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 5 months ago
- Accompanying analysis code for the FRASER manuscript☆25Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆66Updated 3 weeks ago
- Python function for TMB snake plots☆16Updated 5 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year