mskcc / mimsiLinks
Microsatellite Instability Classification using Multiple Instance Learning
☆27Updated 9 months ago
Alternatives and similar repositories for mimsi
Users that are interested in mimsi are comparing it to the libraries listed below
Sorting:
- Overview of GDC Harmonization Workflows☆33Updated 2 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 9 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- Git repo for CONIPHER tree building☆24Updated 8 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆63Updated 3 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆51Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆19Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 6 years ago
- ☆41Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Time-Course Multi-Omics data integration☆26Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year