Microsatellite Instability Classification using Multiple Instance Learning
☆28Mar 3, 2025Updated last year
Alternatives and similar repositories for mimsi
Users that are interested in mimsi are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 3 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- Software program for checking sample matching for NGS data☆138Jun 20, 2024Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆51Feb 20, 2025Updated last year
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 3 months ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- Stream any content(uncensored) from torrents to your machine without downloading the file!☆10Jun 4, 2021Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Overview of GDC Harmonization Workflows☆36May 16, 2023Updated 2 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Jan 30, 2026Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated last month
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Aug 22, 2023Updated 2 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- ☆11Apr 25, 2024Updated last year
- Somatic Variant Call for ctDNA☆12Mar 1, 2016Updated 10 years ago
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆52Mar 14, 2026Updated last week
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 6 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆58Updated this week
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 4 months ago
- Design data and process for the AdaptyvBio protein design competition☆10Dec 11, 2024Updated last year
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago