VarDict
☆204Jan 5, 2024Updated 2 years ago
Alternatives and similar repositories for VarDict
Users that are interested in VarDict are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 6 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆253Aug 5, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆538Oct 14, 2026Updated 2 weeks ago
- Tools for working with genomic and high throughput sequencing data.☆379Updated this week
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆207Aug 23, 2026Updated 2 months ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- ☆57Mar 31, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,031Aug 24, 2024Updated 2 years ago
- ☆23Sep 4, 2018Updated 8 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆420May 25, 2026Updated 5 months ago
- Count bases in BAM/CRAM files☆327Jul 10, 2026Updated 3 months ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Haplotype VCF comparison tools☆475Dec 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 4 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆880Sep 3, 2026Updated last month
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆179Jan 7, 2020Updated 6 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- The nimble & robust variant annotator☆196Apr 20, 2026Updated 6 months ago
- Copy number variant detection from targeted DNA sequencing☆617Oct 15, 2026Updated 2 weeks ago
- LoFreq Star: Sensitive variant calling from sequencing data☆111Oct 16, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆281Sep 21, 2025Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 3 years ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 8 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago