AstraZeneca-NGS / VarDict
VarDict
☆191Updated last year
Alternatives and similar repositories for VarDict:
Users that are interested in VarDict are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆238Updated 3 months ago
- A tool set for short variant discovery in genetic sequence data.☆194Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago
- Structural variation and indel detection by local assembly☆239Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- Precision HLA typing from next-generation sequencing data☆194Updated 10 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆175Updated this week
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆213Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆245Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆165Updated 5 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆195Updated 3 years ago
- ☆109Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆262Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆256Updated 6 months ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 2 months ago
- Gene fusion detection and visualization☆119Updated 2 years ago
- ASCAT R package☆173Updated last month
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Annotation and Ranking of Structural Variation☆228Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆183Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆208Updated 6 months ago
- Full-Length Alternative Isoform analysis of RNA☆217Updated this week