dariober / cnv_facetsLinks
Somatic copy variant caller (CNV) for next generation sequencing
☆72Updated 9 months ago
Alternatives and similar repositories for cnv_facets
Users that are interested in cnv_facets are comparing it to the libraries listed below
Sorting:
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated 3 weeks ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆69Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆21Updated 2 weeks ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆41Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆48Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆82Updated this week
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- ☆73Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- ☆30Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 3 months ago
- Mutational signature analysis for low statistics SNV data☆63Updated 10 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 3 years ago