dariober / cnv_facetsLinks
Somatic copy variant caller (CNV) for next generation sequencing
☆73Updated last year
Alternatives and similar repositories for cnv_facets
Users that are interested in cnv_facets are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 2 months ago
- ☆72Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Tumor Mutational Burden☆61Updated last month
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- ☆21Updated last week
- Microsatellite Analysis for Normal-Tumor InStability☆74Updated 3 years ago
- ☆77Updated 5 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆65Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- ☆43Updated last year