Somatic copy variant caller (CNV) for next generation sequencing
☆80Sep 12, 2024Updated 2 years ago
Alternatives and similar repositories for cnv_facets
Users that are interested in cnv_facets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility functions for FACETS☆40Oct 24, 2025Updated 11 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆111Sep 25, 2026Updated 2 weeks ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Sep 15, 2026Updated 3 weeks ago
- DriverPower☆26Jan 18, 2025Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated 3 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast method for inferring cancer clonal population structure from SNV data.☆77Jan 20, 2026Updated 8 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆219Mar 20, 2024Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Oct 5, 2026Updated last week
- Software program for checking sample matching for NGS data☆144Jun 20, 2024Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- ☆13Sep 24, 2025Updated last year
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated last month
- ☆37Jul 28, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆15Jun 18, 2026Updated 3 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago